Publications

1. Kowiel M, Brzezinski D, Porebski PJ, Shabalin IG, Jaskolski M, Minor W (2019)
   Automatic recognition of ligands in electron density by machine learning.
   Bioinformatics (Oxford, England) 35 (3):452-461. Times cited: 13. [Pub Med ID: 30016407] [Pub Med Central ID: PMC6361236]
2. Grabowski M, Shabalin I, Porebski PJ, Domagalski MJ, Zheng H, Cooper D, Venkataramany BS, Bourne PE, Minor W (2019)
   Data Sharing in Structural Biology: Advances and Challenges
   in Data Sharing: Recent Progress and Remaining Challenges - Computer Science, Technology and Applications, Nova Science Publishers, New York :29-68.
3. Matelska D, Shabalin IG, Jabłońska J, Domagalski MJ, Kutner J, Ginalski K, Minor W (2019)
   Classification, substrate specificity and structural features of D-2-hydroxyacid dehydrogenases: 2HADH knowledgebase.
   BMC evolutionary biology 18 (1):199. Times cited: 9. [Pub Med ID: 30577795] [Pub Med Central ID: PMC6303947]
4. Raczynska JE, Shabalin IG, Minor W, Wlodawer A, Jaskolski M (2018)
   A close look onto structural models and primary ligands of metallo-β-lactamases.
   Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy 40 :1-12. Times cited: 35. [Pub Med ID: 30466711] [Pub Med Central ID: PMC6260963]
5. Handing KB, Niedzialkowska E, Shabalin IG, Kuhn ML, Zheng H, Minor W (2018)
   Characterizing metal-binding sites in proteins with X-ray crystallography.
   Nature protocols 13 (5):1062-1090. Times cited: 36. [Pub Med ID: 29674755] [Pub Med Central ID: PMC6235626]
6. Miłaczewska A, Kot E, Amaya JA, Makris TM, Zając M, Korecki J, Chumakov A, Trzewik B, Kędracka-Krok S, Minor W, Chruszcz M, Borowski T (2018)
   On the Structure and Reaction Mechanism of Human Acireductone Dioxygenase.
   Chemistry (Weinheim an der Bergstrasse, Germany) 24 (20):5225-5237. Times cited: 14. [Pub Med ID: 29193386]
7. Kutner J, Shabalin IG, Matelska D, Handing KB, Gasiorowska O, Sroka P, Gorna MW, Ginalski K, Wozniak K, Minor W (2018)
   Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies.
   Biochemistry 57 (6):963-977. Times cited: 11. [Pub Med ID: 29309127] [Pub Med Central ID: PMC6469932]
8. Wlodawer A, Dauter Z, Porebski PJ, Minor W, Stanfield R, Jaskolski M, Pozharski E, Weichenberger CX, Rupp B (2018)
   Detect, correct, retract: How to manage incorrect structural models.
   The FEBS journal 285 (3):444-466. Times cited: 33. [Pub Med ID: 29113027] [Pub Med Central ID: PMC5799025]
9. Shabalin IG, Porebski PJ, Minor W (2018)
   Refining the macromolecular model - achieving the best agreement with the data from X-ray diffraction experiment.
   Crystallography reviews 24 (4):236-262. Times cited: 21. [Pub Med ID: 30416256] [Pub Med Central ID: PMC6219471]
10. Porebski PJ, Sroka P, Zheng H, Cooper DR, Minor W (2018)
    Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps.
    Protein science : a publication of the Protein Society 27 (1):86-94. Times cited: 23. [Pub Med ID: 28815771] [Pub Med Central ID: PMC5734276]
11. Zheng H, Cooper DR, Porebski PJ, Shabalin IG, Handing KB, Minor W (2017)
    CheckMyMetal: a macromolecular metal-binding validation tool.
    Acta crystallographica. Section D, Structural biology 73 (Pt 3):223-233. Times cited: 155. [Pub Med ID: 28291757] [Pub Med Central ID: PMC5349434]
12. Zheng H, Porebski PJ, Grabowski M, Cooper DR, Minor W (2017)
    Databases, Repositories, and Other Data Resources in Structural Biology.
    Methods in molecular biology (Clifton, N.J.) 1607 :643-665. Times cited: 3. [Pub Med ID: 28573593] [Pub Med Central ID: PMC5587190]
13. Grabowski M, Minor W (2017)
    Sharing Big Data.
    IUCrJ 4 (Pt 1):3-4. Times cited: 2. [Pub Med ID: 28250936] [Pub Med Central ID: PMC5331460]
14. Rupp B, Wlodawer A, Minor W, Helliwell JR, Jaskolski M (2016)
    Correcting the record of structural publications requires joint effort of the community and journal editors.
    The FEBS journal 283 (24):4452-4457. Times cited: 23. [Pub Med ID: 27229767] [Pub Med Central ID: PMC5124416]
15. Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W (2016)
    A public database of macromolecular diffraction experiments.
    Acta crystallographica. Section D, Structural biology 72 (Pt 11):1181-1193. Times cited: 77. [Pub Med ID: 27841751] [Pub Med Central ID: PMC5108346]
16. Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J (2016)
    Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.
    Structure (London, England : 1993) 24 (4):502-508. Times cited: 47. [Pub Med ID: 27050687] [Pub Med Central ID: PMC5070601]
17. Grabowski M, Niedzialkowska E, Zimmerman MD, Minor W (2016)
    The impact of structural genomics: the first quindecennial.
    Journal of structural and functional genomics 17 (1):1-16. Times cited: 48. [Pub Med ID: 26935210] [Pub Med Central ID: PMC4834271]
18. Niedzialkowska E, Gasiorowska O, Handing KB, Majorek KA, Porebski PJ, Shabalin IG, Zasadzinska E, Cymborowski M, Minor W (2016)
    Protein purification and crystallization artifacts: The tale usually not told.
    Protein science : a publication of the Protein Society 25 (3):720-33. Times cited: 32. [Pub Med ID: 26660914] [Pub Med Central ID: PMC4815408]
19. Handing KB, Shabalin IG, Szlachta K, Majorek KA, Minor W (2016)
    Crystal structure of equine serum albumin in complex with cetirizine reveals a novel drug binding site.
    Molecular immunology 71 :143-151. Times cited: 17. [Pub Med ID: 26896718] [Pub Med Central ID: PMC4800003]
20. Minor W, Dauter Z, Helliwell JR, Jaskolski M, Wlodawer A (2016)
    Safeguarding Structural Data Repositories against Bad Apples.
    Structure (London, England : 1993) 24 (2):216-20. Times cited: 28. [Pub Med ID: 26840827] [Pub Med Central ID: PMC4743038]
21. Porebski PJ, Cymborowski M, Pasenkiewicz-Gierula M, Minor W (2016)
    Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations.
    Acta crystallographica. Section D, Structural biology 72 (Pt 2):266-80. Times cited: 24. [Pub Med ID: 26894674] [Pub Med Central ID: PMC4756610]
22. Minor W, Dauter Z, Jaskolski M (2016)
    The young person's guide to the PDB.
    Postepy biochemii 62 (3):242-249. Times cited: 2. [Pub Med ID: 28132477] [Pub Med Central ID: PMC5610703]
23. Zheng H, Handing KB, Zimmerman MD, Shabalin IG, Almo SC, Minor W (2015)
    X-ray crystallography over the past decade for novel drug discovery - where are we heading next?
    Expert opinion on drug discovery 10 (9):975-89. Times cited: 38. [Pub Med ID: 26177814] [Pub Med Central ID: PMC4655606]